Structure of PDB 5gkp Chain B

Receptor sequence
>5gkpB (length=239) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]
PSRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHA
EGVDRKLCEAKPDITFPQKFLSQNTDYKCSGFDRGALAAAGNHRKSQLAV
DQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPK
LEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVI
ETVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGAK
3D structure
PDB5gkp Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer.
ChainB
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.30.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B R117 C141 D145 R146 G153 R181 R55 C79 D83 R84 G91 R119
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5gkp, PDBe:5gkp, PDBj:5gkp
PDBsum5gkp
PubMed27738134
UniProtQ95NM6|NUCG_CAEEL Endonuclease G, mitochondrial (Gene Name=cps-6)

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