Structure of PDB 5ggn Chain B

Receptor sequence
>5ggnB (length=151) Species: 9606 (Homo sapiens) [Search protein sequence]
VLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQATGHVMAKR
VFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLG
SQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSWGDPVLLKTDVPLS
S
3D structure
PDB5ggn Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
ChainB
Resolution1.211 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.4.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 LEC B R129 Y152 D179 E180 W206 R207 R32 Y55 D82 E83 W109 R110 MOAD: Kd=0.22mM
External links
PDB RCSB:5ggn, PDBe:5ggn, PDBj:5ggn
PDBsum5ggn
PubMed27493216
UniProtQ8WZA1|PMGT1_HUMAN Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 (Gene Name=POMGNT1)

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