Structure of PDB 5fvc Chain B

Receptor sequence
>5fvcB (length=367) Species: 162145 (human metapneumovirus) [Search protein sequence]
LQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGEIL
YAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYMLDI
HGVEKSWVEEIDKEARKTMATLLKESSGNIPQNQRPSAPDTPIILLCVGA
LIFTKLASTIEVGLETTVRRANRVLSDALKRYPRMDIPKIARSFYDLFEQ
KVYHRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTMLRWGVIAR
SSNNIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPKAGLLSLA
NCPNFASVVLGNASGLGIIGMYRGRVPNTELFSAAESYAKSLKESNKINF
SSLGLTDEEKEAAEHFL
3D structure
PDB5fvc Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein.
ChainB
Resolution4.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B K171 S174 R185 R186 R189 N246 G255 T257 W261 S314 M337 Y338 R339 G340 R341 K155 S158 R169 R170 R173 N230 G239 T241 W245 S298 M321 Y322 R323 G324 R325
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5fvc, PDBe:5fvc, PDBj:5fvc
PDBsum5fvc
PubMed26880565
UniProtQ91F57

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