Structure of PDB 5f9y Chain B

Receptor sequence
>5f9yB (length=467) Species: 5807 (Cryptosporidium parvum) [Search protein sequence]
SLLGITADKITSFADWYSQVIVKSEMIEYYDISGCYILRPWSYFIWETIQ
SVFDQKIKQHDVQNAYFPIFVTQKKLEEVAWVTKSSDLAEPIAIRPTSET
IMYPYFAKWIRSHRDLPLKINQWTSIVRWEFKHPTPFIRTREFLWQEGHT
AHSTRKEALEMVDIILNEYASIYEDLLATPVVKGTKSENEKFPGGDITKS
IEGFIPEIGRAVQAATSHLLGQNFSKMFGVEFEDEKGNKEYAHQTSWGLT
TRAIGVMIMTHGDNKGLVLPPKVAPVQVIIIPIIFKTVITEEQKKICNEV
ECILKKAGVRVKIDDRSNYTPGWKYNHWEVKGVCLRFEVGPRDIEKRSVR
VVVRDNMEKMDIPISELESKIPKLLEEFQNRLLFKAKQRQNESIIRVDTF
DKVMDTLNQKKMVIAPWCEDVSCEEEIKKETARGAMKSLCIPNDQIFTKC
FFCDKLAKKFTLFGRSY
3D structure
PDB5f9y Crystal Structure of Prolyl-tRNA Synthetase from Cryptosporidium parvum complexed with L-Proline and AMP
ChainB
Resolution2.8 Å
3D
structure
Catalytic site residues are labeled in the structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PRO B T300 E302 W348 E350 H352 F395 H421 S449 W450 T97 E99 W145 E147 H149 F192 H218 S246 W247
BS02 AMP B I341 R342 T343 F346 T419 T453 R455 I138 R139 T140 F143 T216 T250 R252
BS03 ZN B C621 C626 C671 C418 C423 C450
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Nov 28 23:48:44 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5f9y', asym_id = 'B', title = 'Crystal Structure of Prolyl-tRNA Synthetase from...sporidium parvum complexed with L-Proline and AMP'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5f9y', asym_id='B', title='Crystal Structure of Prolyl-tRNA Synthetase from...sporidium parvum complexed with L-Proline and AMP')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0000166,0004812,0004827,0005524,0005737,0006418,0006433', uniprot = '', pdbid = '5f9y', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000166,0004812,0004827,0005524,0005737,0006418,0006433', uniprot='', pdbid='5f9y', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>