Structure of PDB 5f7o Chain B

Receptor sequence
>5f7oB (length=285) Species: 6183 (Schistosoma mansoni) [Search protein sequence]
SKVKVGIIGGSGFLFKKVGVRQVTTPFGKPSDTLVEGFVGDVACVVLPRH
GGHLIPPSEVNYRANVWALKDLGCTHILATNACGSLQEDLVPGDFVVLNQ
FMDKTWGRENTFYGSKPDSLKGVLHMPMAEPFCERTRQILIQAARNKSIN
VYDKKTMDKSACIHPCVHAEGSAVTINGPRFSTRCESFIHKAMGLDIVNM
TLVPEVSLAREAGLSYASIAIVTDFDCWKSEEEHVCVDMVLEQFRKSVVH
VREILLEAVALIGAEDWTKTIEANKALVMSSRLDL
3D structure
PDB5f7o Crystal Structure of Schistosoma mansoni Adenosine Phosphorylase/5'-Methylthioadenosine Phosphorylase and Its Importance on Adenosine Salvage Pathway.
ChainB
Resolution1.8148 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) K34 H59 D230 D232
Catalytic site (residue number reindexed from 1) K29 H53 D224 D226
Enzyme Commision number 2.4.2.28: S-methyl-5'-thioadenosine phosphorylase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 ADE B A88 C89 G90 F187 V204 M206 D230 D232 A82 C83 G84 F181 V198 M200 D224 D226
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016757 glycosyltransferase activity
GO:0016763 pentosyltransferase activity
GO:0017061 S-methyl-5-thioadenosine phosphorylase activity
Biological Process
GO:0006166 purine ribonucleoside salvage
GO:0009116 nucleoside metabolic process
GO:0019509 L-methionine salvage from methylthioadenosine
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5f7o, PDBe:5f7o, PDBj:5f7o
PDBsum5f7o
PubMed27935959
UniProtI0B503

[Back to BioLiP]