Structure of PDB 5f5q Chain B

Receptor sequence
>5f5qB (length=236) Species: 28958 (Canavalia cathartica) [Search protein sequence]
DTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAH
IIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYK
ETNTILSWSFTSKLKSNSTHETNALHFVFNQFSKDQKDLILQGDATTGTD
GNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKS
PDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN
3D structure
PDB5f5q Structural characterization of a lectin from Canavalia virosa seeds with inflammatory and cytotoxic activities.
ChainB
Resolution2.52 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D10 Y12 N14 D19 D9 Y11 N13 D18
BS02 MN B E8 D10 D19 H24 E7 D9 D18 H23
BS03 MMA B Y12 N14 G98 L99 Y100 A207 D208 R228 Y11 N13 G97 L98 Y99 A206 D207 R227
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
GO:0005536 D-glucose binding
GO:0005537 D-mannose binding
GO:0030145 manganese ion binding
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding
Biological Process
GO:0042311 vasodilation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5f5q, PDBe:5f5q, PDBj:5f5q
PDBsum5f5q
PubMed27737777
UniProtC0HJY1|CONV_CANCT Concanavalin V

[Back to BioLiP]