Structure of PDB 5f3w Chain B

Receptor sequence
>5f3wB (length=359) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence]
MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALF
GAGSNFNYDTIITKGKKSVYVELDFEVNGNNYKIIREYDSGRGGAKLYKN
GKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLE
TVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGEKEMSNLEKEKEKLTK
FVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELT
KDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILD
EPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDG
NVSKVKING
3D structure
PDB5f3w ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex
ChainB
Resolution3.11 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B A52 S54 N57 Y58 R92 I108 S109 K144 A52 S54 N57 Y58 R92 I108 S109 K144
BS02 AGS B K14 S15 G35 S36 G37 K38 S39 S40 I62 T63 K64 Q134 E947 K14 S15 G35 S36 G37 K38 S39 S40 I62 T63 K64 Q134 E301
BS03 AGS B Y890 L910 N914 S916 E919 Y244 L264 N268 S270 E273
Gene Ontology
Molecular Function
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006302 double-strand break repair

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Molecular Function
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Biological Process
External links
PDB RCSB:5f3w, PDBe:5f3w, PDBj:5f3w
PDBsum5f3w
PubMed26717941
UniProtQ58718|RAD50_METJA DNA double-strand break repair Rad50 ATPase (Gene Name=rad50)

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