Structure of PDB 5f1q Chain B

Receptor sequence
>5f1qB (length=507) Species: 377628 (Yersinia pestis Nepal516) [Search protein sequence]
KTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKIGTTEIEPSL
AERWEVSEDGKTYTFYLRKGVKWQDNKDFKPTRDFNADDVIYSFMRQKDD
KNPYHKVSGGSYEYFQGMGMGDLITNVVKVDDNTVRFELTRPESPFLADL
AMDFASILSAEYADNMLKAGTPEKVDLNPIGTGPFQLQQYQKDSRILYKA
FPGFWGTKPKIDRLVFSITPDASVRYAKLQKNECQIMPYPNPADIARMKE
DKTINLMEQPGLNVGYLSFNIEKKPLDNLKVRQALTMAVNKDAIIDAVYQ
GAGQAAKNLIPPTMWGYNDDVKDYAYDPAKAKELLKEAGLPDGFSIDLWA
MPVQRPYNPNARRMAEMIQSDWAKIGVKAKIVTYEWGEYLKRAKDGEHET
VMMGWTGDNGDPDNFFATLFSCDAAKQGSNYSKWCYKPFEDLIQPARAEA
DHDKRVALYKQAQVVMNEQAPALIIAHSTVYEPVRKEVKGYVVDPLGKHH
FDNVSLD
3D structure
PDB5f1q Crystal Structure of Periplasmic Dipeptide Transport Protein from Yersinia pestis
ChainB
Resolution1.956 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLN B T48 G50 Y142 W433 T434 D436 G525 T20 G22 Y114 W405 T406 D408 G497
BS02 GLN B T48 R383 Y385 M431 W433 Y459 T20 R355 Y357 M403 W405 Y431
Gene Ontology
Molecular Function
GO:0071916 dipeptide transmembrane transporter activity
GO:1904680 peptide transmembrane transporter activity
Biological Process
GO:0015833 peptide transport
GO:0035442 dipeptide transmembrane transport
GO:0042938 dipeptide transport
GO:0055085 transmembrane transport
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space
GO:0043190 ATP-binding cassette (ABC) transporter complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5f1q, PDBe:5f1q, PDBj:5f1q
PDBsum5f1q
PubMed
UniProtA0A0H2YM47

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