Structure of PDB 5eix Chain B

Receptor sequence

>5eixB (length=701) Species: 573 (Klebsiella pneumoniae)

GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW
EVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHI
ATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYALTEEEKTGVL
EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQ
TTAIMDMLLAKKRSEDRRNWLQEKGMAERLALHEFTENAYLNYSMYVIMD
RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG
DSACYEAMVLMAQPFSYRYPLGDGQGNWGAPKSFAAMRYTESRLSKYAEL
LLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP
PHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKI
YQNGRGSVRMRAVWSKEDGAVVITALPHQVSGAKVLEQIAAQMRNKKLPM
VDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNM
IGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLV
AFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEM
KIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLH
E

3D structure

• PDB: 5eix Structure of a quinolone-stabilized cleavage complex of topoisomerase IV from Klebsiella pneumoniae and comparison with a related Streptococcus pneumoniae complex.
• Chain: B
• Resolution: 3.35 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	B	E419 G443 R1029 K1039 H1075 H1077 I1172	E20 G44 R251 K261 H297 H299 I391
BS02	dna	B	L446 N447 S459 H498 R616 R617 Y1018 Y1120 I1172 A1173 G1175 M1176 R1326	L47 N48 S60 H99 R217 R218 Y240 Y339 I391 A392 G394 M395 R545
BS03	MG	B	D491 D493	D92 D94

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 23 03:31:49 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5eix', asym_id = 'B', title = 'Structure of a quinolone-stabilized cleavage com...with a related Streptococcus pneumoniae complex. '

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5eix', asym_id='B', title='Structure of a quinolone-stabilized cleavage com...with a related Streptococcus pneumoniae complex. ')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003677,0003918,0005524,0005694,0006259,0006265', uniprot = '', pdbid = '5eix', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0003918,0005524,0005694,0006259,0006265', uniprot='', pdbid='5eix', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>