Structure of PDB 5eg1 Chain B

Receptor sequence
>5eg1B (length=576) Species: 562 (Escherichia coli) [Search protein sequence]
KQKNSLFNYIYSLMDVRGKFLFFSMLFITSLSSIIISISPLILAKITDLL
SGSLSNFSYEYLVLLACLYMFCVISNKASVFLFMILQSSLRINMQKKMSL
KYLRELYNENITNLSKNNAGYTTQSLNQASNDIYILVRNVSQNILSPVIQ
LISTIVVVLSTKDWFSAGVFFLYILVFVIFNTRLTGSLASLRKHSMDITL
NSYSLLSDTVDNMIAAKKNNALRLISERYEDALTQENNAQKKYWLLSSKV
LLLNSLLAVILFGSVFIYNILGVLNGVVSIGHFIMITSYIILLSTPVENI
GALLSEIRQSMSSLAGFIQRHAENKATSPSIPFLNMERKLNLSIRELSFS
YSDDKKILNSVSLDLFTGKMYSLTGPSGSGKSTLVKIISGYYKNYFGDIY
LNDISLRNISDEDLNDAIYYLTQDDYIFMDTLRFNLRLANYDASENEIFK
VLKLANLSVVNNEPVSLDTHLINRGNNYSGGQKQRISLARLFLRKPAIII
IDEATSALDYINESEILSSIRTHFPDALIINISHRINLLECSDCVYVLNE
GNIVASGHFRDLMVSNEYISGLASVT
3D structure
PDB5eg1 Structural and Functional Basis for Lipid Synergy on the Activity of the Antibacterial Peptide ABC Transporter McjD.
ChainB
Resolution3.42 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ANP B N479 N480 S482 G483 G484 Q485 N476 N477 S479 G480 G481 Q482
BS02 ANP B Y354 S380 G381 S382 G383 K384 S385 T386 Q426 Y351 S377 G378 S379 G380 K381 S382 T383 Q423
BS03 MG B S385 Q426 S382 Q423
BS04 P6L B I155 I158 R186 I152 I155 R183
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0034040 ATPase-coupled lipid transmembrane transporter activity
GO:0140359 ABC-type transporter activity
Biological Process
GO:0006869 lipid transport
GO:0015031 protein transport
GO:0030153 bacteriocin immunity
GO:0043213 bacteriocin transport
GO:0055085 transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5eg1, PDBe:5eg1, PDBj:5eg1
PDBsum5eg1
PubMed27555327
UniProtQ9X2W0|MCJD_ECOLX Microcin-J25 export ATP-binding/permease protein McjD (Gene Name=mcjD)

[Back to BioLiP]