Structure of PDB 5dzv Chain B

Receptor sequence

>5dzvB (length=522) Species: 10090 (Mus musculus) [Search protein sequence]

QLHYSVPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNL
QNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDN
PPMFPATQKALFILESRLLDSRFPLEGASDADVGSNALLTYRLSTNEHFS
LDVPPNVKPLGLVLRKPLDREEAAEIRLLLTATDGGKPELTGTVQLLITV
LDVNDNAPVFDRSLYTVKLPENVPNGTLVIKVNASDLDEGVNGDVMYSFS
SDVSSDIKSKFHMDTVSGEITVIGIIDFEESKAYKIPLEARDKGFPQLPG
HCTILVEVVDANDNAPQLTVSSLSLPVSEDSQPGRVVTLISVFDRDSGAN
GQVTCSLTPHIPFKLVSTFKNYYSLVLDSALDRETIANYDVIVTARDGGS
PSLWATASVSVEVADVNDNAPLFAQPEYTVFVKENNPPGAHIFTVSAMDA
DAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHELLQFQV
SARDAGVPALGSNVTLQVFVLD

3D structure

PDB

5dzv Structural Basis of Diverse Homophilic Recognition by Clustered alpha- and beta-Protocadherins.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	FUC	B	N228 G229	N225 G226
BS02	CA	B	E8 E64 D96 I97 D99 D132	E8 E64 D96 I97 D99 D132
BS03	CA	B	E8 D62 E64 D99	E8 D62 E64 D99
BS04	CA	B	N98 N100 D130 D132 N136 D187	N98 N100 D130 D132 N136 D184
BS05	CA	B	E115 E174 D205 V206 D208 D241	E115 E171 D202 V203 D205 D238
BS06	CA	B	E115 D172 E174 D208 N209	E115 D169 E171 D205 N206
BS07	CA	B	N207 N209 D239 D241 N245 D295	N204 N206 D236 D238 N242 D292
BS08	CA	B	E224 E282 D313 A314 D316 D349	E221 E279 D310 A311 D313 D346
BS09	CA	B	E224 D280 E282 D316	E221 D277 E279 D313
BS10	CA	B	N315 N317 D347 D349 N353 D400	N312 N314 D344 D346 N350 D397
BS11	CA	B	E332 E387 D418 V419 D421 D454	E329 E384 D415 V416 D418 D451
BS12	CA	B	E332 D385 E387 D421	E329 D382 E384 D418
BS13	CA	B	N420 N422 D452 D454 N458 D510	N417 N419 D449 D451 N455 D504
BS14	MAN	B	T196 Q198	T193 Q195
BS15	MAN	B	E192 T194	E189 T191
BS16	MAN	B	I395 T409	I392 T406

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5dzv, PDBe:5dzv, PDBj:5dzv
PDBsum	5dzv
PubMed	27161523
UniProt	Q91Y13\|PCDA7_MOUSE Protocadherin alpha-7 (Gene Name=Pcdha7)

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