Structure of PDB 5dyo Chain B

Receptor sequence

>5dyoB (length=218) Species: 10090 (Mus musculus) [Search protein sequence]

DVVMTQTPLTLSITIGQPVSISCKSSQSLFASDGRTYLNWLLQRPGQSPE
RLIYLVSNLDSGVLDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFP
QTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN
VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE
ATHKTSTSPIVKSFNRNE

3D structure

PDB

5dyo Three-dimensional structure, binding, and spectroscopic characteristics of the monoclonal antibody 43.1 directed to the carboxyphenyl moiety of fluorescein.

Chain

Resolution

2.36 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FLU	B	Y37 N39 W94 G96 Q101	Y37 N39 W94 G96 Q101	PDBbind-CN: -logKd/Ki=10.21,Kd=61pM
BS02	FLU	B	S32 D33	S32 D33	PDBbind-CN: -logKd/Ki=10.21,Kd=61pM

External links

PDB	RCSB:5dyo, PDBe:5dyo, PDBj:5dyo
PDBsum	5dyo
PubMed	26756394

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