Structure of PDB 5drz Chain B

Receptor sequence

>5drzB (length=227) Species: 9606 (Homo sapiens) [Search protein sequence]

QVQLVQSGGGVVKPGASSRLSCAASGFTFTDYYMSWIRQAPGKGLEWVAY
ITKDGSEKKYADSLQHRFAVSRDNANNLVFLQLNTVEDDDTGVYYCARDD
GYYDRSGYYGVFDLWGQGIRVTVSSASTKGPSVFPLAPSSKSTSGGTAAL
GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSS
LGTQTYICNVNHKPSNTKVDKRVEPKS

3D structure

PDB

5drz Molecular basis for epitope recognition by non-neutralizing anti-gp41 antibody F240.

Chain

Resolution

2.54 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	Y32 Y33 K52A D95 D96 G97 Y98 Y99 D100 R100A Y100D	Y32 Y33 K53 D99 D100 G101 Y102 Y103 D104 R105 Y108

External links

PDB	RCSB:5drz, PDBe:5drz, PDBj:5drz
PDBsum	5drz
PubMed	27827447

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