Structure of PDB 5dj3 Chain B

Receptor sequence
>5dj3B (length=351) Species: 141454 (Streptomyces wadayamensis) [Search protein sequence]
LNIADGHARQALSPGQQKIVNELPVLWAESEQRPVQQIESEAHQAYFTLL
GQHGYPAEPGRVLSCYSSSVSMEILARSLSASVDRVALVHPTFDNIADLL
RGNGLDLVPVEEDALHGADLSAELLSSVGCVFVTTPNNPTGRVLAEERLR
RLAEQCAEHGTVLALDTSFRGFDAAAHYDHYAVLQEAGCRWVVIEDTGKL
WPTLDLKAGLLVFSEDIGLPVEKIYSDILLGVSPLILALIREFSRDAADG
GLADLHAFILHNRSVVRRALAGVEGVSFPDPESRSSVERVAFAGRTGTEV
WEELQRHHVFALPCRQFHWAEPSDGDHMVRIALSRSTEPLEKSVQVLRTV
L
3D structure
PDB5dj3 Streptomyces wadayamensis MppP Is a Pyridoxal 5'-Phosphate-Dependent l-Arginine alpha-Deaminase, gamma-Hydroxylase in the Enduracididine Biosynthetic Pathway.
ChainB
Resolution2.227 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 5DK B D27 G28 H29 S89 S90 S91 F115 N160 D188 S190 K221 D227 K229 R352 D5 G6 H7 S67 S68 S69 F93 N138 D166 S168 K199 D205 K207 R330
BS02 MG B D116 D120 D94 D98
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
GO:0046872 metal ion binding
Biological Process
GO:0006520 amino acid metabolic process
GO:0009058 biosynthetic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5dj3, PDBe:5dj3, PDBj:5dj3
PDBsum5dj3
PubMed26551990
UniProtA0A0X1KHF5

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