Structure of PDB 5diz Chain B

Receptor sequence
>5dizB (length=472) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
RNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLC
SASITDISLQYLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGD
YAFKVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAG
IALEEAEISALLKVSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWF
CGEKAGEVGDDVGMLREAVLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRC
LSCSEQLACVDTNEVETQKFVDSLVALAMDVFSEFQDWLEKHGDYEAIVD
GANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKRRVKTL
LENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMR
DHIFELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSW
HFPVSCENNEESSRTWMCISRQ
3D structure
PDB5diz Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes.
ChainB
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.26.5: ribonuclease P.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C281 C284 H494 C511 C250 C253 H451 C468
Gene Ontology
Molecular Function
GO:0004518 nuclease activity
GO:0004526 ribonuclease P activity
GO:0046872 metal ion binding
Biological Process
GO:0001682 tRNA 5'-leader removal
GO:0006397 mRNA processing
GO:0008033 tRNA processing
GO:0043144 sno(s)RNA processing
Cellular Component
GO:0005634 nucleus
GO:0043231 intracellular membrane-bounded organelle

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5diz, PDBe:5diz, PDBj:5diz
PDBsum5diz
PubMed26655022
UniProtQ680B9|PRRP2_ARATH Proteinaceous RNase P 2 (Gene Name=PRORP2)

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