Structure of PDB 5d1l Chain B

Receptor sequence
>5d1lB (length=111) Species: 9606 (Homo sapiens) [Search protein sequence]
NIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARAIQHMEQELKAQGV
GVQCPVCREPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEERKRLYQR
QQERGGIIDLE
3D structure
PDB5d1l Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B.
ChainB
Resolution1.618 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C135 C138 H158 C161 C7 C10 H30 C33
BS02 ZN B C153 H155 C198 C25 H27 C54
Gene Ontology
Molecular Function
GO:0061630 ubiquitin protein ligase activity

View graph for
Molecular Function
External links
PDB RCSB:5d1l, PDBe:5d1l, PDBj:5d1l
PDBsum5d1l
PubMed26475854
UniProtQ96BH1|RNF25_HUMAN E3 ubiquitin-protein ligase RNF25 (Gene Name=RNF25)

[Back to BioLiP]