Structure of PDB 5cpw Chain B

Receptor sequence
>5cpwB (length=278) [Search protein sequence]
GMEVLDLVTGPDSVTEIEAFLNPRMGQPPTPESLTEGGQYYGWSRGINLA
TSDTEDSPENNTLPTWSMAKLQLPMLNTLQMWEAVSVKTEVVGSGSLLDV
HGFNKPTDTVNTKGISTPVEGSQYHVFAVGGEPLDLQGLVTDARTKYKEE
GVVTIKTITKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPDPAKNENTR
YFGNYTGGTTTPPVLQFTNTLTTVLLDENGVGPLCKGEGLYLSCVDIMGW
RVTRNYDVHHWRGLPRYFKITLRKRWVK
3D structure
PDB5cpw Structural and Functional Analysis of Murine Polyomavirus Capsid Proteins Establish the Determinants of Ligand Recognition and Pathogenicity.
ChainB
Resolution1.75 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL B G78 E91 N93 G46 E59 N61
BS02 SIA B Y72 R77 H298 Y40 R45 H260
BS03 SIA B T67 E68 Y72 R77 T35 E36 Y40 R45
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5cpw, PDBe:5cpw, PDBj:5cpw
PDBsum5cpw
PubMed26474293
UniProtP49302|VP1_POVMP Capsid protein VP1

[Back to BioLiP]