Structure of PDB 5cmc Chain B

Receptor sequence
>5cmcB (length=255) Species: 27923 (Mnemiopsis leidyi) [Search protein sequence]
GSKNLIGRHLRLGSVESQPFMFFATEGCEGNDCWSGMVNDMVVKLSEDLG
FTYEYIQPDDRKFGALNKTTNEWNGMIRDLLDDKTDMIAIDLSTNSARKS
AIDYSFPFMDAGIKAVVKGEGTTLNQVLELLDQDKYKWGVIGSRHPETLL
KTHRDSRYSRLVDEGVELKDLNHAIETLRGGLFVFIDEGPVLAHNLISDC
DVFSVGEEFQSFEYAFGLPKDSPYKSLIDSHLLKFREEGFIDILWEKWSS
GNSVC
3D structure
PDB5cmc Molecular lock regulates binding of glycine to a primitive NMDA receptor.
ChainB
Resolution1.28 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLY B F63 D91 S93 R98 R144 H145 E188 F63 D91 S93 R98 R144 H145 E188 MOAD: Kd=2.48uM
BS02 MG B D110 E213 D110 E213
Gene Ontology
Molecular Function
GO:0015276 ligand-gated monoatomic ion channel activity
GO:0046872 metal ion binding
Biological Process
GO:0034220 monoatomic ion transmembrane transport
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5cmc, PDBe:5cmc, PDBj:5cmc
PDBsum5cmc
PubMed27791085
UniProtA0A0R4I973

[Back to BioLiP]