Structure of PDB 5cfd Chain B

Receptor sequence
>5cfdB (length=232) Species: 434309 (Saffold virus) [Search protein sequence]
SPFPVTVREHAGTFFSTTPDTTVPVYGNTISTPFDYMCGEFTDLLSLCKI
PTFLGNLDSNKKRIPYFSATNSTPATPLVTYQVTLSCSCMANSMLAAVAR
NFNQYRGSLNYLFVFTGSAMTKGKFLISYTPPGAGEPKTLDQAMQATYAI
WDLGLNSSYNFTVPFISPTHYRQTSYNTPTITSVDGWLTVWQLTPLTYPL
GVPNDSHILTLVSGGDDFTLRMPVTFTKYVPQ
3D structure
PDB5cfd Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
ChainB
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.22.28: picornain 3C.
3.6.4.13: RNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B P19 D20 T21 P24 G27 N28 T29 I30 S31 P33 D35 P19 D20 T21 P24 G27 N28 T29 I30 S31 P33 D35
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity

View graph for
Molecular Function
External links
PDB RCSB:5cfd, PDBe:5cfd, PDBj:5cfd
PDBsum5cfd
PubMed27279624
UniProtC0MHL9|POLG_SAFV Genome polyprotein

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