Structure of PDB 5c8l Chain B

Receptor sequence
>5c8lB (length=179) Species: 264462 (Bdellovibrio bacteriovorus HD100) [Search protein sequence]
HLEEKTLSTRQIFKGRYLKIEQDQVQAPDGRTYTREYILHPGAAMMIPLL
PNGNVVMIHQYRHAVKKVFLEFPAGKRDHNEETLLTAKRELLEETGYEAK
DWKFLTTIHPVIGYSNEHIDLYLARDLTHLEQRLDQGQFIEVVEVKPADL
MQLVLEGKVSDVKTQIGAFWLDKFLRGEW
3D structure
PDB5c8l Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorus.
ChainB
Resolution1.8 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) R64 A76 E92 E96 Q138
Catalytic site (residue number reindexed from 1) R62 A74 E90 E94 Q136
Enzyme Commision number 3.6.1.13: ADP-ribose diphosphatase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLC B R64 G77 K78 R62 G75 K76
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0047631 ADP-ribose diphosphatase activity
Biological Process
GO:0006753 nucleoside phosphate metabolic process
GO:0019693 ribose phosphate metabolic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5c8l, PDBe:5c8l, PDBj:5c8l
PDBsum5c8l
PubMed26524597
UniProtQ6MIH8

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