Structure of PDB 5bte Chain B

Receptor sequence
>5bteB (length=368) Species: 284811 (Eremothecium gossypii ATCC 10895) [Search protein sequence]
VFESELLLQRRLATTALKQPKELGYYSTNVGGELKVMDESNLSYYYLPDA
DIEKHIDLSAGARKFQDEQAEAEDDTGSLHGLLQTLMEYERRKSKKVNAD
IIAFRGQVKRLIHCAFGGHATDVDMYVMSFDGQLFIRAARKKLEFPTSPR
ESWAYLAYYSGYKFERMALLDRPVAETPREVLESRGKQVVRNGPQYKTVV
RTGVGEHKLVLGAEVDGIFDFREPTGDNLKHYVELKVAKKVQTLKDATNF
EQKLFSVWLQCFLVGINRVIIGFRDEKFVLKSVEEFSTSEIPLLLKSTRN
ACVDAIKWYGALTKWLCELPRGPEDDFKLYRLSCSRGALHLRQLHDEDLA
NGDDIIPGWFREWRRSLS
3D structure
PDB5bte Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes.
ChainB
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.13.-
3.6.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B H114 F117 G118 G119 H120 A158 Y159 G162 Y163 D217 E235 K237 Q253 K254 H113 F116 G117 G118 H119 A157 Y158 G161 Y162 D216 E234 K236 Q252 K253
BS02 MN B D217 E235 L236 D216 E234 L235
BS03 MN B E215 D217 E214 D216
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0004527 exonuclease activity
GO:0034353 mRNA 5'-diphosphatase activity
GO:0046872 metal ion binding
Biological Process
GO:0000956 nuclear-transcribed mRNA catabolic process
GO:0006397 mRNA processing
GO:0110155 NAD-cap decapping
Cellular Component
GO:0005634 nucleus
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5bte, PDBe:5bte, PDBj:5bte
PDBsum5bte
PubMed26101253
UniProtQ753P9|DXO_EREGS Decapping nuclease RAI1 (Gene Name=RAI1)

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