Structure of PDB 5bpd Chain B

Receptor sequence
>5bpdB (length=262) Species: 2261 (Pyrococcus furiosus) [Search protein sequence]
SKDRMVELLQEHFELNLYEARAYVALVAFGVLTPAELASVSEVPAPRTYD
VLRSLEKKGFAMTQPGKTNKYRPVHPANVLEKFIQDWQERVKEELEAKKK
AKEELLELMAPLIETEVPKYGVERVWVVRGIKNSTLKTKEMLEEAQNEIL
LADDGFIAVNLEDDIIKAVDRGVKTKILLTKNLLPRLKASKIIDYAKEGK
LELRALDKFDLPMLICDEEVFFALEDLAARYFNYETQVWIKDHRVVALFK
EKFNEYWEKAEK
3D structure
PDB5bpd Structural Insights into Nonspecific Binding of DNA by TrmBL2, an Archaeal Chromatin Protein.
ChainB
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B P47 Y50 P46 Y49
BS02 dna B L18 Y19 P47 R48 L17 Y18 P46 R47
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:5bpd, PDBe:5bpd, PDBj:5bpd
PDBsum5bpd
PubMed26299937
UniProtQ8U3H1|TMBL2_PYRFU Putative HTH-type transcriptional regulator TrmBL2 (Gene Name=trmBL2)

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