Structure of PDB 5axm Chain B

Receptor sequence
>5axmB (length=239) Species: 2214 (Methanosarcina acetivorans) [Search protein sequence]
TREIYAEMRCIPPVVLRADGRNFKNTLSGLGFEKPYDKTFARAMADTAEL
FIKKSGLSPLFAYTFSDEISFLFTDLPFDGRVEKIDSVVASFLGSALTIK
LRLEEPIAFDSRLVALQKEEIPEYFHRRQLEAWRNFVASWGYYALRNEGM
GRNEAAKYLKRKKESEIHEMLFERGINLATLPSWQRRGVIISKEAREIQG
FNPVSGKEEKSLRRKITQNWEIPKFKSEKGIPFLEKLIN
3D structure
PDB5axm Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
ChainB
Resolution2.21 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B G58 S60 P79 F80 G202 F203 N204 P205 E211 S213 R215 R216 G56 S58 P77 F78 G200 F201 N202 P203 E209 S211 R213 R214
BS02 MG B D21 G22 D69 D19 G20 D67
BS03 MG B D21 D69 D19 D67
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0005525 GTP binding
GO:0008193 tRNA guanylyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006400 tRNA modification
GO:0008033 tRNA processing
GO:0099116 tRNA 5'-end processing

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Molecular Function
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Biological Process
External links
PDB RCSB:5axm, PDBe:5axm, PDBj:5axm
PDBsum5axm
PubMed27051866
UniProtA0A1C7D1G9

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