Structure of PDB 5apg Chain B

Receptor sequence
>5apgB (length=184) Species: 572478 (Vulcanisaeta distributa DSM 14429) [Search protein sequence]
MIPRVFIYRLPQDDPRKNTAIKLVRFGFAQLVDSIKALPSGSIILDPTVK
TPLTPSDRVIAESRGLSLIDCSWKRAVDVHTKFIRGKFIRRRLPLLIAAN
PTHYGKPYILSTIEAVAAALYIMGFKDEAMEVLRLYKWGPNFIIINQKYL
ERYAAGDLSPERELLGVDDVDNGLEQLMRVLTNG
3D structure
PDB5apg Ribosome Biogenesis Factor Tsr3 is the Aminocarboxypropyl Transferase Responsible for 18S Rrna Hypermodification in Yeast and Humans
ChainB
Resolution1.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.5.1.157: rRNA small subunit aminocarboxypropyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 EEM B N18 T19 P47 I69 C71 W73 L93 Y108 L110 S111 T112 A115 N18 T19 P47 I69 C71 W73 L93 Y108 L110 S111 T112 A115
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0106388 18S rRNA aminocarboxypropyltransferase activity
GO:1904047 S-adenosyl-L-methionine binding
Biological Process
GO:0000455 enzyme-directed rRNA pseudouridine synthesis
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:5apg, PDBe:5apg, PDBj:5apg
PDBsum5apg
PubMed27084949
UniProtE1QU22|TSR3_VULDI 16S rRNA aminocarboxypropyltransferase (Gene Name=Vdis_0418)

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