Structure of PDB 5agd Chain B

Receptor sequence
>5agdB (length=344) Species: 1397 (Niallia circulans) [Search protein sequence]
HHHHHSSASDGDTAMKAFNDTFWDPNAKMFWKDSKREKHQDFWVEAELWE
LVMDAYQHTSDPALKAELKTQIDDVYDGTVAKYGQDWTNNPFNDNIMWWA
MGSARAYQITGNPRYLEAARDHFDFVYDTQWDEEFANGGIWWLNSDHNTK
NACINFPAAQAALYLYDITKDEHYLNAATKIFRWGKTMLTDGNGKVFDRI
EIEHGAVPDATHYNQGTYIGSAVGLYKATGNAVYLDDAVKAAKFTKNHLV
DSNGVLNYEGPNGDLKGGKTILMRNLAHLQKTLDETGQYPEFSAEFDEWL
AFNIEMAWSHQNSDHIVDGNWAGQLLSGTYESWSSAAAVQALNG
3D structure
PDB5agd Evidence for a Boat Conformation at the Transition State of Gh76 Alpha-1,6-Mannanases- Key Enzymes in Bacterial and Fungal Mannoprotein Metabolism
ChainB
Resolution1.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.101: mannan endo-1,6-alpha-mannosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BMA B D71 W73 F122 N125 D294 D41 W43 F92 N95 D264
BS02 MAN B W73 D124 N125 W128 W172 C183 Y243 D294 W43 D94 N95 W98 W142 C153 Y213 D264
BS03 MAN B W172 N181 C183 D228 Y243 W142 N151 C153 D198 Y213
BS04 MAN B R229 D239 R199 D209
BS05 MAN B D71 W73 F122 N125 D294 D41 W43 F92 N95 D264
Gene Ontology
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Biological Process
External links
PDB RCSB:5agd, PDBe:5agd, PDBj:5agd
PDBsum5agd
PubMed25772148
UniProtQ9Z4P9

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