Structure of PDB 5af7 Chain B

Receptor sequence
>5af7B (length=391) Species: 1247726 (Advenella mimigardefordensis DPN7) [Search protein sequence]
ELTPEQRTLQTQARELAQSVFASTAVQTDLTEQYPWDNVAQLRDAGFMGM
MLPTSVGGRGLSTLDTVIVIEEMAKACATMGRITVDSNLGAIGAITKYGS
EEQIKLAADLVLAGDKPAICISEPNAGSAASEMTTRADKNGDHYILNGEK
YWITGGGVSKLHLIFARVFDDGVEQGIGAFITVLDDHGPEGLKVGRRLYA
MGVRGIPETHLEFHDLKIHKSMMITFPDGLKRGFAALMSAYNAQRVGAGA
VALGIAQCAFEEGVAYLKRREQFGRPLAEFQGLQWMVADMSVQLEAARLM
LRSAAVSGETFPDINKAAQAKIFAAETANKVTNDALQFFGSSGYGRHNPM
ERHVRDARMFTIAGGTAQILRTQVASKILDMKLPQTRDGYL
3D structure
PDB5af7 3-Sulfinopropionyl-Coenzyme a (3Sp-Coa) Desulfinase from Advenella Mimigardefordensis Dpn7(T): Crystal Structure and Function of a Desulfinase with an Acyl-Coa Dehydrogenase Fold.
ChainB
Resolution1.89 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) I123 S124 Q246 G366 S378
Catalytic site (residue number reindexed from 1) I121 S122 Q244 G364 S376
Enzyme Commision number 3.13.1.4: 3-sulfinopropanoyl-CoA desulfinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD B R272 F275 L279 F282 L285 Q339 F340 G342 S343 R270 F273 L277 F280 L283 Q337 F338 G340 S341
BS02 FAD B I121 I123 S124 G129 S130 W154 T156 E210 M361 A365 T368 Q370 I371 Q387 I119 I121 S122 G127 S128 W152 T154 E208 M359 A363 T366 Q368 I369 Q385
Gene Ontology
Molecular Function
GO:0003995 acyl-CoA dehydrogenase activity
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
GO:0016787 hydrolase activity
GO:0050660 flavin adenine dinucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:5af7, PDBe:5af7, PDBj:5af7
PDBsum5af7
PubMed26057676
UniProtK4L7X3|SPCAD_ADVMD 3-sulfinopropanoyl-CoA desulfinase (Gene Name=acd)

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