Structure of PDB 4zpm Chain B

Receptor sequence

>4zpmB (length=314) Species: 10090 (Mus musculus) [Search protein sequence]

QLRYSVPEEQSPGALVGNVARALGLELRRLGPGCLRINHLGAPSPRYLEL
DLTNGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAIEVEILDIN
DNSPRFPRPDYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEH
FELDLKPLSKVLELVLRKGLDREQTALHYLVLTAVDGGIPARSGTAQIAV
RVLDTNDNSPAFDQSTYRVQLREDAPPGTLVVKLNASDPDEGSNGELRYS
LSSYTSDRERQLFSIDVTTGEVRVSGTLDYEESSSYQIYVQATDRGPVPM
AGHCKVLVDIIDVN

3D structure

PDB

4zpm Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.

Chain

Resolution

2.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	MAN	B	S212 A304 H306	S209 A301 H303
BS02	MAN	B	T198 Q200	T195 Q197
BS03	CA	B	N209 N211 D241 D243 N247 D297	N206 N208 D238 D240 N244 D294
BS04	CA	B	E117 E176 D207 T208 D210 D243	E117 E173 D204 T205 D207 D240
BS05	CA	B	E117 D174 E176 D210	E117 D171 E173 D207
BS06	CA	B	N100 N102 D132 D134 N138 D189	N100 N102 D132 D134 N138 D186
BS07	CA	B	E8 E66 D98 I99 D101 D134	E8 E66 D98 I99 D101 D134
BS08	CA	B	E8 E9 D64 E66 D101	E8 E9 D64 E66 D101

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:4zpm, PDBe:4zpm, PDBj:4zpm
PDBsum	4zpm
PubMed	26478182
UniProt	Q91Y09

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