Structure of PDB 4yu5 Chain B

Receptor sequence

>4yu5B (length=689) Species: 637380 (Bacillus cereus biovar anthracis str. CI)

NLIQEDRLAEALKERGTINPASSKEETKKAVEKYIEKKQGNGQVPTSKAK
QAPYKGSVRTDKVLVLLVEFSDYKHNNIDQTPGYMYSNDFSREHYQKMLF
GNEPYTLFDGSKVKTFKQYYEEQSGGSYTTDGYVTEWLTVPGKASDYGAD
GSSGHDNKGPKGARDLVKEALHAAAEKGLDLSQFDQFDRNEPDGVIDHLM
VIHAGVGQEAGGGKLGDDAIWSHRSKLAIDPVAIEGTKSKVDYFGGKVAA
HDYTIEPEDGAVGVFAHAFGHDLGLPDEYDTKYTGTGSPVEAWSLMSGGS
WTGKIAGTEPTSFSPQNKDFLQKNMGGNWAKILEVDYDKIKRGVGVPTYI
DQSVTKSNRPGVVRVNLPGKSVETIKPEFGKHAYYSTRGDDMHTTLETPF
FDLTKGTNAKFDYKANYELEAECDFVEVHAVTEDGTKTLIDRLGEKVVQG
DKDTTDGKWIDKSYDLSQFKGKKVKLQFDYITDPAVTYKGFAMDHVNVTV
DGQVVFSDDAEGQSKMNLNGFVVSDGTEKKAHYYYLEWRNYAGSDNGLKA
GKGPVYNTGLVVWYADDSFKDNWVGVHPGEGFLGVVDSHPEAFVGNLNGK
PTYGNTGMQIADAAFSFDQTPAWSVNSLTRGQFNYSGLQGVTTFDDSKVY
SNNQIADAGRKVPKLGLKFQVVGQADDKSAGAVWIKRHH

3D structure

• PDB: 4yu5 Structural Basis for Latency and Function of Immune Inhibitor A Metallopeptidase, a Modulator of the Bacillus anthracis Secretome.
• Chain: B
• Resolution: 2.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ZN	B	N50 H379 H383 D389	N1 H267 H271 D277
BS02	CA	B	D699 H701 Q721 D724	D587 H589 Q609 D612
BS03	CA	B	D288 F290 D305 V307 D309	D185 F187 D193 V195 D197
BS04	CA	B	G251 D253 D259 Q320 D329 A331	G148 D150 D156 Q208 D217 A219
BS05	CA	B	E532 D536 D595 A597 V598	E420 D424 D483 A485 V486

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 16:41:23 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4yu5', asym_id = 'B', title = 'Structural Basis for Latency and Function of Imm... a Modulator of the Bacillus anthracis Secretome.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4yu5', asym_id='B', title='Structural Basis for Latency and Function of Imm... a Modulator of the Bacillus anthracis Secretome.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0006508,0008233', uniprot = '', pdbid = '4yu5', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006508,0008233', uniprot='', pdbid='4yu5', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>