Structure of PDB 4yp9 Chain B

Receptor sequence
>4yp9B (length=342) Species: 669 (Vibrio harveyi) [Search protein sequence]
MVLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVV
YPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLME
ALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQP
FLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQ
VNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGA
VDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEA
IKWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSD
3D structure
PDB4yp9 Discovery of Glycomimetic Agonists from a Protocell Metabolism, Proto-natural Product Libraries
ChainB
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 A1B B S79 Y81 W82 N159 R215 S265 T266 W289 R310 S57 Y59 W60 N137 R193 S243 T244 W267 R288
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0030246 carbohydrate binding
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space

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Molecular Function
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Cellular Component
External links
PDB RCSB:4yp9, PDBe:4yp9, PDBj:4yp9
PDBsum4yp9
PubMed
UniProtP54300|LUXP_VIBHA Autoinducer 2-binding periplasmic protein LuxP (Gene Name=luxP)

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