Structure of PDB 4ygc Chain B

Receptor sequence
>4ygcB (length=64) Species: 9606 (Homo sapiens) [Search protein sequence]
MSPQELQLHYFKMHDYDGNNLLDGLELSTAITMSEDELINIIDGVLRDDD
KNNDGYIDYAEFAK
3D structure
PDB4ygc Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
ChainB
Resolution2.4 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D129 N131 D133 Y135 E140 D50 N52 D54 Y56 E61
BS02 CA B D81 D83 N85 L87 E92 D15 D17 N19 L21 E26
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding

View graph for
Molecular Function
External links
PDB RCSB:4ygc, PDBe:4ygc, PDBj:4ygc
PDBsum4ygc
PubMed32356523
UniProtQ8NI22|MCFD2_HUMAN Multiple coagulation factor deficiency protein 2 (Gene Name=MCFD2)

[Back to BioLiP]