Structure of PDB 4v59 Chain B

Receptor sequence

>4v59B (length=1464) Species: 5541 (Thermomyces lanuginosus)

MRPEVEQELAYTLLVELLAYQFAMPVRWIETQDVILAEKRTERIVEIGPS
DTLGGMARRTLQSKYEAYDAATSVQRQILCYCKDAKEIYYDVEPIDALTK
DQRALFKQQLEIIARYLKMDLRAGDKAFVASQESQKALQAQLDLWQAEHG
DIYAAGIEPAFDPLKARVYDSSWNWARQDALSMYYDIIFGRLRVVDREIV
SQCIQIMNRSNPLLLEFMQYHIDHCPTERGETYQLAKELGQQLIENCKEV
LGKPPVYKDVSIPTGPQTTIDARGNIQYQEVPRASARKFEHYVKQMAEGG
PISQYSNRTKVQNDLRSVYKLIRRQHRLSKSSQLQFNALYKDVIRALAMN
ESQIMQKVETIPFLHLRKKDEFGNWEYSKKLTGIYLDGLEAAARSGLTFQ
GKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYAR
CGARGSQLVVVPFNQGSKQDVEALVNYIYDTKNGLGWDLDYVVPFAAIPE
NGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPL
SPNHGTFGNDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTG
LMSANNLVAEGVEKLGVRTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADL
NGGLQFIPDLKGLMTKLRKEIMETSAIRQAVIKETAIENKVVNGEDHEAL
YRRVITEPRANLKYPFPELPDWDKDIKPLNDQLRGMVNLDKVVVVTGLAE
IGPWGNARTRWEMEAYGKFSLEGCVEMAWMMGLIKNHNGPLKGKPYSGWV
DAKTGEPVDDKDVKAKYEKYILEHSGIRLIEPELFGGYDPNRKQLLQEVV
IEQDLEPFEASKEQAEEFKREHGDKVEIFEIPETGQYTVRLRKGATLLIP
KALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSS
GITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQ
ESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARV
CLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGF
MESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVL
TTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIK
SQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIA
PLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGN
AVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKVMEQ
FDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQAIGVHPKYLFATLDKAQY
EAYCVKVQARQKKAYRFFHNGLINNKLFVAKDKAPYEDRIQSKVFLNPQS
RVTQESNGELKFPA

3D structure

• PDB: 4v59 Structure of Fungal Fatty Acid Synthase and Implications for Iterative Substrate Shuttling
• Chain: B
• Resolution: 3.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	NAP	B	G659 G661 I665 T684 S685 R686 N715 Q716 F746 A748 P800 Y814 K818 I844 L852	G408 G410 I414 T433 S434 R435 N464 Q465 F495 A497 P549 Y563 K567 I593 L601

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Nov 27 14:37:43 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4v59', asym_id = 'B', title = 'Structure of Fungal Fatty Acid Synthase and Implications for Iterative Substrate Shuttling'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4v59', asym_id='B', title='Structure of Fungal Fatty Acid Synthase and Implications for Iterative Substrate Shuttling')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0000287,0004312,0004315,0004316,0005835,0006633,0008897,0016746,0042759', uniprot = '', pdbid = '4v59', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0004312,0004315,0004316,0005835,0006633,0008897,0016746,0042759', uniprot='', pdbid='4v59', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>