Structure of PDB 4udp Chain B

Receptor sequence
>4udpB (length=512) Species: 887061 (Methylovorus sp. MP688) [Search protein sequence]
IFDYVIVGGGTAGSVLANRLSARPENRVLLIEAGIDTPENNIPPEIHDGL
RPWLPRLSGDKFFWPNLTIHRAAREPQFYEQGRLLGGGSSVNMVVSNRGL
PRDYDEWQALGADGWDWQGVLPYFIKTERDADYGDDPLHGNAGPIPIGRV
DSRHWSDFTVAATQALEAAGLPNIHDQNARFDDGYFPPAFTLKGEERFSA
ARGYLDASVRVRPNLSLWTESRVLKLLTTGNAITGVSVLRGRETLQVQAR
EVILTAGALQSPAILLRTGIGPAADLHALGIPVLADRPGVGRNLWEHSSI
GVVAPLTEQARADARHQLGIRASSGVDPATPSDLFLHIGADPVSGLASAV
FWVNKPSSTGWLKLKDADPFSYPDVDFNLLSDPRDLGRLKAGLRLITHYF
AAPSLAKYGLALALSRFAAPQPGGPLLNDLLQDEAALERYLRTNVGGVWH
ASGTARIGRADDSQAVVDKAGRVYGVTGLRVADASIMPTVPTANTNLPTL
MLAEKIADAILT
3D structure
PDB4udp Structure-Based Enzyme Tailoring of 5-Hydroxymethylfurfural Oxidase
ChainB
Resolution1.9 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) L335 F368 W369 V465 H467 A510 N511
Catalytic site (residue number reindexed from 1) L318 F351 W352 V448 H450 A493 N494
Enzyme Commision number 1.1.3.47: 5-(hydroxymethyl)furfural oxidase.
1.8.3.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD B G12 G14 T15 A16 E36 A37 W68 G92 G97 G98 N102 M103 V105 V233 T265 A266 G267 W466 D500 A501 N511 T512 N513 G8 G10 T11 A12 E32 A33 W64 G82 G87 G88 N92 M93 V95 V223 T255 A256 G257 W449 D483 A484 N494 T495 N496
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor
GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor
GO:0050660 flavin adenine dinucleotide binding
GO:0071949 FAD binding

View graph for
Molecular Function
External links
PDB RCSB:4udp, PDBe:4udp, PDBj:4udp
PDBsum4udp
PubMed
UniProtE4QP00|HMFO_METS6 5-(hydroxymethyl)furfural oxidase (Gene Name=MPQ_0130)

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