Structure of PDB 4typ Chain B

Receptor sequence
>4typB (length=206) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
MNIVLMGLPGAGKGTQAEKIVAKYGIPHISTGDMFRAAMKEETPLGLEAK
SYIDKGELVPDEVTIGIVRERLSGFLLDGFPRTVAQAEALEEILEEMGRK
LEHVIHIDVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGE
LYQRADDNEETVAKRLEVNMKQMKPLLAFYDSKEVLRNVNGEQDMEKVFK
DLRELL
3D structure
PDB4typ Crystal structures of thermally stable adenylate kinase mutants designed by local structural entropy optimization and structure-guided mutagenesis
ChainB
Resolution2.9 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K13 R88 R127 R160 R171
Catalytic site (residue number reindexed from 1) K13 R82 R121 R154 R165
Enzyme Commision number 2.7.4.3: adenylate kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C130 C133 C150 D153 C124 C127 C144 D147
BS02 AP5 B P9 G10 G12 K13 G14 T15 T31 R36 L58 V59 T64 G85 R88 Q92 R127 T136 Y137 H138 R160 R171 P9 G10 G12 K13 G14 T15 T31 R36 L58 V59 T64 G79 R82 Q86 R121 T130 Y131 H132 R154 R165
Gene Ontology
Molecular Function
GO:0004017 adenylate kinase activity
GO:0004550 nucleoside diphosphate kinase activity
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016301 kinase activity
GO:0016776 phosphotransferase activity, phosphate group as acceptor
GO:0019205 nucleobase-containing compound kinase activity
GO:0046872 metal ion binding
GO:0050145 nucleoside monophosphate kinase activity
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0009123 nucleoside monophosphate metabolic process
GO:0009132 nucleoside diphosphate metabolic process
GO:0009165 nucleotide biosynthetic process
GO:0016310 phosphorylation
GO:0044209 AMP salvage
GO:0046940 nucleoside monophosphate phosphorylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Biological Process
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Cellular Component
External links
PDB RCSB:4typ, PDBe:4typ, PDBj:4typ
PDBsum4typ
PubMed
UniProtP16304|KAD_BACSU Adenylate kinase (Gene Name=adk)

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