Structure of PDB 4rdm Chain B

Receptor sequence
>4rdmB (length=164) Species: 242231 (Neisseria gonorrhoeae FA 1090) [Search protein sequence]
LENCLGVQKIAPEQIRQLFAQTSEYHFSIPAKTEEKSNLNVFFGEGRRDK
RGFVKPRPWYEVELIVSKDITSQEGYPVLKSFTVITDDGWQFQCKTSGDY
SKNFRSENDLKTLGKWIKGRLESHGCLQNNEKITHETLREYGNDHFELRS
TDNPDVWLLSFKGK
3D structure
PDB4rdm Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII.
ChainB
Resolution2.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.21.4: type II site-specific deoxyribonuclease.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 dna B R227 S277 G278 D279 K282 N283 R285 N288 L290 R47 S97 G98 D99 K102 N103 R105 N108 L110
BS02 dna B K212 E214 K216 S217 G224 E225 R237 I245 S247 Y280 K282 K32 E34 K36 S37 G44 E45 R57 I65 S67 Y100 K102
External links