Structure of PDB 4qiw Chain B

Receptor sequence
>4qiwB (length=1069) Species: 69014 (Thermococcus kodakarensis KOD1) [Search protein sequence]
PTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPD
IPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIP
VVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYF
IINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVER
KKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFD
NLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGVD
PENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLF
RVAFGQLVKDMQYQMTKTYQRENIQRFVRNSIRPDVLSERIEHALATGSW
PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRI
CPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIEERRPA
PGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVK
EVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIE
YLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAP
RNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFE
DRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKR
YLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRT
SPPRRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDK
FASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEA
IGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGR
RLEADIFIGVIYYQRLHHMVADKMHARSFGEMERDVLIGHGAAMLLIERL
LEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKL
LLDELKAMVIRPSLRLKDR
3D structure
PDB4qiw The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.
ChainB
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C1065 C1068 C1083 C1012 C1015 C1030
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4qiw, PDBe:4qiw, PDBj:4qiw
PDBsum4qiw
PubMed25311937
UniProtQ5JE32

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