Structure of PDB 4pos Chain B

Receptor sequence
>4posB (length=270) Species: 943908 (Human polyomavirus 9) [Search protein sequence]
VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDN
PNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLH
QGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVT
IKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGA
TTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQN
WRGLPRYFNVTLRKRVVKNP
3D structure
PDB4pos Crystallographic and glycan microarray analysis of human polyomavirus 9 VP1 identifies N-glycolyl neuraminic acid as a receptor candidate.
ChainB
Resolution2.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL B S77 K78 S45 K46
BS02 SIA B L65 Y68 D71 G134 H274 N276 Y277 L33 Y36 D39 G102 H242 N244 Y245
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:4pos, PDBe:4pos, PDBj:4pos
PDBsum4pos
PubMed24648448
UniProtE9NQ90

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