Structure of PDB 4pbp Chain B

Receptor sequence
>4pbpB (length=210) Species: 7955 (Danio rerio) [Search protein sequence]
MEFFKNLSGKVLQFKTATDNSYVKLYPEKPLSLSAFTLCMRVATELPLDR
EVILFAYYTPDVDELNVWRERDGRVSLYIQSSKDAAFFRLPPLSTLQTHL
CVAWESATGLTAFWMDGRRSLHQVYRKGYSIRSGGTVVLGQDPDSYVGSF
DVDQSFVGEIANLQMWDYVLSSAQIKAVYYNQDNRVKGNVFDWDTIEYDV
TGNVLVVPDN
3D structure
PDB4pbp Crystal structures for short-chain pentraxin from zebrafish demonstrate a cyclic trimer with new recognition and effector faces.
ChainB
Resolution1.648 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D139 D141 Q151 D142 D144 Q154
BS02 CA B D60 D139 P140 D141 D63 D142 P143 D144
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0015485 cholesterol binding
GO:0046872 metal ion binding
Biological Process
GO:0006953 acute-phase response
GO:0008150 biological_process
GO:0051607 defense response to virus
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4pbp, PDBe:4pbp, PDBj:4pbp
PDBsum4pbp
PubMed25592778
UniProtQ0IIP8|CRP_DANRE C-reactive protein (Gene Name=crp)

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