Structure of PDB 4op4 Chain B

Receptor sequence
>4op4B (length=265) Species: 243277 (Vibrio cholerae O1 biovar El Tor str. N16961) [Search protein sequence]
TDSPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTN
FWARRGTQSPLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAAD
MKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLM
ARNELIDMCIVGEPSSTLAVGDVVKNGRRGGGFLTDTGELLAAVVAAVEE
VNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHKVNECVRIADLE
KLTDMYQKTLNHLLG
3D structure
PDB4op4 The Dimerization Domain in DapE Enzymes Is required for Catalysis.
ChainB
Resolution1.651 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.5.1.18: succinyl-diaminopimelate desuccinylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B D101 E136 H239 D100 E135 H238
BS02 ZN B H68 D101 E164 H67 D100 E163
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity

View graph for
Molecular Function
External links
PDB RCSB:4op4, PDBe:4op4, PDBj:4op4
PDBsum4op4
PubMed24806882
UniProtQ9KQ52|DAPE_VIBCH Succinyl-diaminopimelate desuccinylase (Gene Name=dapE)

[Back to BioLiP]