Structure of PDB 4ojz Chain B

Receptor sequence
>4ojzB (length=705) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence]
HPNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKD
AGGGYTHEQHKRNYKAIRNAGFLYQVTGDEKYLTFAKDLLLAYAKMYPSL
GEHPNRKEQSPGRLFWQSLNEAVWLVYSIQGYDAIIDGLAAEEKQEIESG
VFLPMAKFLSVESPETFNKIHNHGTWAVAAVGMTGYVLGNDELVEISLMG
LDKTGKAGFMKQLDKLFSPDGYYTEGPYAQRYALMPFIWFAKAIETNEPE
RKIFEYRNNILLKAVYTTIDLSYAGYFFPINDALKDKGIDTVELVHALAI
VYSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYRSILLGD
GADGDQGALSIHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNE
IVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHNTLVVNEQSHFYGDV
TTADLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSMLLVNVPSLEHP
IVVDVLNVSADKASTFDLPLYFNGQIIDFSFKVKDNKNVMKMLGKRNGYQ
HLWLRNTAPVGDASERATWILDDRFYSYAFVTSTPSKKQNVLIAELGAND
PNYNLRQQQVLIRRVEKAKQASFVSVLEPHGKYDGSLETTSGAYSNVKSV
KHVSENGKDVVVVDLKDGSNVVVALSYNANSEQVHKVNAGEEAIEWKGFS
SVVVR
3D structure
PDB4ojz Structure of a PL17 Family Alginate Lyase Demonstrates Functional Similarities among Exotype Depolymerases.
ChainB
Resolution1.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.2.2.26: oligo-alginate lyase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 LGU B K136 H202 H413 Y450 K107 H173 H384 Y421
BS02 MAV B Q146 H202 R438 Q117 H173 R409
BS03 BEM B N149 Y257 R260 Y261 R438 N120 Y228 R231 Y232 R409
BS04 ZN B H415 D433 H464 H386 D404 H435
Gene Ontology
Cellular Component
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:4ojz, PDBe:4ojz, PDBj:4ojz
PDBsum4ojz
PubMed24478312
UniProtQ21FJ0|EALGL_SACD2 Exo-oligoalginate lyase (Gene Name=alg17C)

[Back to BioLiP]