Structure of PDB 4msd Chain B

Receptor sequence
>4msdB (length=185) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence]
KIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGKLRQN
AFFITHLVIPLQEATSDTCGITDEASLFEFQDKHNLLTLGWIHTHPTQTC
FMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTSGIFRLLDPEGLQTIVKCR
KPGLFHPHEGKVYTMVAQPGHVREINSKLQVVDLR
3D structure
PDB4msd Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product.
ChainB
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.19.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B H341 H343 D354 H93 H95 D106
BS02 ZN B H356 C397 H404 H406 H108 C149 H156 H158
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0061578 K63-linked deubiquitinase activity
GO:0140492 metal-dependent deubiquitinase activity
Biological Process
GO:0016579 protein deubiquitination
GO:0070536 protein K63-linked deubiquitination

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4msd, PDBe:4msd, PDBj:4msd
PDBsum4msd
PubMed24787148
UniProtQ9P371|SST2_SCHPO AMSH-like protease sst2 (Gene Name=sst2)

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