Structure of PDB 4ms7 Chain B

Receptor sequence
>4ms7B (length=188) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence]
TFKIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGKLR
QNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIHTHPTQ
TCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTSGIFRLLDPEGLQTIVK
CRKPGLFHPHEGKVYTMVAQPGHVREINSKLQVVDLRV
3D structure
PDB4ms7 Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product.
ChainB
Resolution1.673 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.4.19.-
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 ZN B H356 C397 H404 H406 H110 C151 H158 H160
BS02 ZN B H341 H343 D354 H95 H97 D108
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0061578 K63-linked deubiquitinase activity
GO:0140492 metal-dependent deubiquitinase activity
Biological Process
GO:0016579 protein deubiquitination
GO:0070536 protein K63-linked deubiquitination

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:4ms7, PDBe:4ms7, PDBj:4ms7
PDBsum4ms7
PubMed24787148
UniProtQ9P371|SST2_SCHPO AMSH-like protease sst2 (Gene Name=sst2)

[Back to BioLiP]