Structure of PDB 4mky Chain B

Receptor sequence
>4mkyB (length=283) Species: 1773 (Mycobacterium tuberculosis) [Search protein sequence]
QRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPN
GVDQPAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQA
ALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAV
RDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQA
MPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRT
WAELDDPALRQLSYDEVLTRIARDGDLLERLDA
3D structure
PDB4mky Molecular Basis for DNA Double-Strand Break Annealing and Primer Extension by an NHEJ DNA Polymerase.
ChainB
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.1: DNA ligase (ATP).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B N16 K29 R56 P58 Q107 N7 K20 R47 P49 Q98
BS02 dna B F66 F67 E68 K69 Q70 H86 R87 F57 F58 E59 K60 Q61 H77 R78
BS03 dna B K220 R223 D230 Q233 K211 R214 D221 Q224
External links
PDB RCSB:4mky, PDBe:4mky, PDBj:4mky
PDBsum4mky
PubMed24239356
UniProtP9WNV3|LIGD_MYCTU Multifunctional non-homologous end joining DNA repair protein LigD (Gene Name=ligD)

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