Structure of PDB 4lrf Chain B

Receptor sequence
>4lrfB (length=390) Species: 1396 (Bacillus cereus) [Search protein sequence]
KYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKL
GLGNIREMKGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQ
VFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVY
TGADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGE
PGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTE
SLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEAL
QEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPS
MKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL
3D structure
PDB4lrf Bioretrosynthetic construction of a didanosine biosynthetic pathway.
ChainB
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 5.4.2.7: phosphopentomutase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN B T85 D156 D286 H291 H339 T83 D154 D284 H289 H337
BS02 MN B D13 T85 D327 H328 D11 T83 D325 H326
BS03 MN B G27 D28 H334 G25 D26 H332
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003824 catalytic activity
GO:0008973 phosphopentomutase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process
GO:0006018 2-deoxyribose 1-phosphate catabolic process
GO:0009117 nucleotide metabolic process
GO:0043094 cellular metabolic compound salvage
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4lrf, PDBe:4lrf, PDBj:4lrf
PDBsum4lrf
PubMed24657930
UniProtQ818Z9|DEOB_BACCR Phosphopentomutase (Gene Name=deoB)

[Back to BioLiP]