Structure of PDB 4lps Chain B

Receptor sequence
>4lpsB (length=215) Species: 85962 (Helicobacter pylori 26695) [Search protein sequence]
SKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVV
EGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALE
KSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCAD
AVIISKADMVEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNF
LLEKKRENYQSTHSF
3D structure
PDB4lps Relationship between Ni(II) and Zn(II) Coordination and Nucleotide Binding by the Helicobacter pylori [NiFe]-Hydrogenase and Urease Maturation Factor HypB.
ChainB
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GDP B P160 K165 P133 K138
BS02 NI B C106 C142 C79 C115
BS03 MG B T60 D86 E135 T33 D59 E108
BS04 GDP B G56 G58 K59 T60 T61 K183 D185 S214 S215 G29 G31 K32 T33 T34 K156 D158 S187 S188
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0008270 zinc ion binding
GO:0016151 nickel cation binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0051604 protein maturation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4lps, PDBe:4lps, PDBj:4lps
PDBsum4lps
PubMed24338018
UniProtO25560|HYPB_HELPY Hydrogenase/urease maturation factor HypB (Gene Name=hypB)

[Back to BioLiP]