Structure of PDB 4h25 Chain B

Receptor sequence
>4h25B (length=188) Species: 9606 (Homo sapiens) [Search protein sequence]
TRPRFLELLKSECHFFNGTERVRFLERYFHNQEEFVRFDSDVGEYRAVTE
LGRPVAESWNSQKDLLEQKRGQVDTYCRHNYGVVESFTVQRRVHPQVTVY
PAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGD
WTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA
3D structure
PDB4h25 T-cell receptor (TCR) interaction with peptides that mimic nickel offers insight into nickel contact allergy.
ChainB
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B F7 L11 S13 F26 E28 Y30 F37 W61 Q64 L67 K71 T77 Y78 H81 N82 V85 F5 L9 S11 F24 E26 Y28 F35 W59 Q62 L65 K69 T75 Y76 H79 N80 V83
BS02 peptide B H96 V99 T100 V101 V186 W188 H94 V97 T98 V99 V184 W186
Gene Ontology
Biological Process
GO:0002250 adaptive immune response
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0005764 lysosome
GO:0005765 lysosomal membrane
GO:0005768 endosome
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0042613 MHC class II protein complex

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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4h25, PDBe:4h25, PDBj:4h25
PDBsum4h25
PubMed23091041
UniProtB8YAC7

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