Structure of PDB 4gim Chain B

Receptor sequence
>4gimB (length=306) Species: 562 (Escherichia coli) [Search protein sequence]
KISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEET
IRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVA
AGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELA
NTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFD
VSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQ
AVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIA
KEYQRL
3D structure
PDB4gim Pseudouridine monophosphate glycosidase: a new glycosidase mechanism.
ChainB
Resolution1.802 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.2.1.70: pseudouridylate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PSU B E31 T33 K93 T112 V113 G132 S147 D149 F196 L274 E27 T29 K89 T108 V109 G128 S143 D145 F192 L270
Gene Ontology
Molecular Function
GO:0004730 pseudouridylate synthase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0016829 lyase activity
GO:0030145 manganese ion binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0001522 pseudouridine synthesis
GO:0046113 nucleobase catabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0032991 protein-containing complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4gim, PDBe:4gim, PDBj:4gim
PDBsum4gim
PubMed23066817
UniProtP33025|PSUG_ECOLI Pseudouridine-5'-phosphate glycosidase (Gene Name=psuG)

[Back to BioLiP]