Structure of PDB 4eum Chain B

Receptor sequence
>4eumB (length=305) Species: 314256 (Oceanicola granulosus HTCC2516) [Search protein sequence]
GVDLGTENLYFQSMMHILSIGECMAELAPADLPGTYRLGFAGDTFNTAWY
LARLRPESRISYFSAIGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLY
LITLERSFAYWRGQSAARELAGDADALAAAMARADVVYFSGITLAILDQC
GRATLLRALAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIA
LPSFEDEAAWFGDAGPDATADRYARAGVRSVVVKNGPHAVHFLQDGRRGR
VPVPPVVVDTTAAGDSFNAGLLDSVLAGQPLETAIAAAAALAGQVVQGKG
ALVEV
3D structure
PDB4eum Crystal structure of a sugar kinase (Target EFI-502132) from Oceanicola granulosus with bound AMP, crystal form II
ChainB
Resolution1.8 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) A253 A254 G255 D256
Catalytic site (residue number reindexed from 1) A262 A263 G264 D265
Enzyme Commision number 2.7.1.45: 2-dehydro-3-deoxygluconokinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP B G225 P226 A280 A283 G236 P237 A289 A292
Gene Ontology
Molecular Function
GO:0008673 2-dehydro-3-deoxygluconokinase activity
GO:0016301 kinase activity
GO:0016772 transferase activity, transferring phosphorus-containing groups
GO:0046872 metal ion binding
Biological Process
GO:0006974 DNA damage response
GO:0016310 phosphorylation
GO:0019698 D-galacturonate catabolic process
GO:0042840 D-glucuronate catabolic process
GO:0046835 carbohydrate phosphorylation
Cellular Component
GO:0005829 cytosol

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Cellular Component
External links
PDB RCSB:4eum, PDBe:4eum, PDBj:4eum
PDBsum4eum
PubMed
UniProtQ2CIP5

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