Structure of PDB 4d8j Chain B

Receptor sequence
>4d8jB (length=148) Species: 562 (Escherichia coli) [Search protein sequence]
MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENE
PVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIV
WQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG
3D structure
PDB4d8j Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome.
ChainB
Resolution3.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B M1 K2 Y3 Q5 K71 R75 K79 W101 L115 M1 K2 Y3 Q5 K71 R75 K79 W101 L115
BS02 dna B Y17 K20 R69 Q72 T73 R77 R80 K92 S93 Y17 K20 R69 Q72 T73 R77 R80 K92 S93
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0005543 phospholipid binding
GO:0042803 protein homodimerization activity
GO:0043565 sequence-specific DNA binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0007059 chromosome segregation
GO:0051276 chromosome organization
GO:0051289 protein homotetramerization
GO:0051301 cell division
Cellular Component
GO:0005737 cytoplasm
GO:0097047 DNA replication termination region

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Cellular Component
External links
PDB RCSB:4d8j, PDBe:4d8j, PDBj:4d8j
PDBsum4d8j
PubMed23084832
UniProtP0A8N0|MATP_ECOLI Macrodomain Ter protein (Gene Name=matP)

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