Structure of PDB 4d79 Chain B

Receptor sequence
>4d79B (length=247) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
SVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALAR
TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECR
VTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVT
TGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGV
DCVFSTEALVYPQSDGFGAATMVTATFGFVAVSHALKKMMAKAARQG
3D structure
PDB4d79 The Crystal Structure and Small-Angle X-Ray Analysis of Csdl/Tcda Reveal a New tRNA Binding Motif in the Moeb/E1 Superfamily.
ChainB
Resolution1.768 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP B G37 G39 G40 I60 D61 R72 Q73 K85 F108 V109 D130 P134 G36 G38 G39 I59 D60 R71 Q72 K84 F107 V108 D129 P133
BS02 ATP B K196 K198 K195 K197
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008641 ubiquitin-like modifier activating enzyme activity
GO:0016874 ligase activity
GO:0030955 potassium ion binding
GO:0031402 sodium ion binding
GO:0042803 protein homodimerization activity
GO:0061503 tRNA threonylcarbamoyladenosine dehydratase
Biological Process
GO:0061504 cyclic threonylcarbamoyladenosine biosynthetic process
Cellular Component
GO:0016020 membrane

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Cellular Component
External links
PDB RCSB:4d79, PDBe:4d79, PDBj:4d79
PDBsum4d79
PubMed25897750
UniProtQ46927|TCDA_ECOLI tRNA threonylcarbamoyladenosine dehydratase (Gene Name=tcdA)

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