Structure of PDB 4d5l Chain B

Receptor sequence
>4d5lB (length=213) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMME
IMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKK
PKFELGKLMELHG
3D structure
PDB4d5l Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
ChainB
Resolution9.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B K56 V66 V114 K116 W117 H124 R136 F138 R146 N148 Q149 I150 R151 K152 Y155 Q157 H158 Q159 R165 K166 Q202 S203 I204 Y205 P206 K36 V46 V94 K96 W97 H104 R116 F118 R126 N128 Q129 I130 R131 K132 Y135 Q137 H138 Q139 R145 K146 Q182 S183 I184 Y185 P186
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
GO:0030154 cell differentiation
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4d5l, PDBe:4d5l, PDBj:4d5l
PDBsum4d5l
PubMed25601755
UniProtG1SS70|RS3A_RABIT Small ribosomal subunit protein eS1 (Gene Name=RPS3A)

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